J3_4TUB_022

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4TUB|1|RA|A|1430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUB_022 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1454

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4TUB|1|RA|G|1390
4TUB|1|RA|C|1391
4TUB|1|RA|G|1392
4TUB|1|RA|G|1393
4TUB|1|RA|G|1394
4TUB|1|RA|A|1395
4TUB|1|RA|C|1396
*
4TUB|1|RA|G|1427
4TUB|1|RA|G|1428
4TUB|1|RA|C|1429
4TUB|1|RA|A|1430
4TUB|1|RA|G|1431
*
4TUB|1|RA|C|1448
4TUB|1|RA|C|1449

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34