J3_4TUB_023

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUB_023 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0746

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4TUB|1|RA|U|2113
4TUB|1|RA|U|2114
4TUB|1|RA|G|2115
*
4TUB|1|RA|C|2218
4TUB|1|RA|U|2219
4TUB|1|RA|A|2220
4TUB|1|RA|A|2221
4TUB|1|RA|C|2222
*
4TUB|1|RA|G|2235
4TUB|1|RA|G|2236
4TUB|1|RA|A|2237
4TUB|1|RA|C|2238
4TUB|1|RA|A|2239
4TUB|1|RA|G|2240

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RD

50S ribosomal protein L2

Chain RI

50S ribosomal protein L9