J3_4TUB_025

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4TUB|1|RA|A|2530, 4TUB|1|RA|U|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUB_025 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.1317

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4TUB|1|RA|C|2529
4TUB|1|RA|A|2530
4TUB|1|RA|U|2531
4TUB|1|RA|C|2532
*
4TUB|1|RA|G|2557
4TUB|1|RA|U|2558
4TUB|1|RA|U|2559
*
4TUB|1|RA|A|2573
4TUB|1|RA|U|2574
4TUB|1|RA|U|2575
4TUB|1|RA|A|2576
4TUB|1|RA|A|2577
4TUB|1|RA|A|2578
4TUB|1|RA|G|2579

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RO

50S ribosomal protein L14