J3_4TUB_041

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUB_041 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0687

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4TUB|1|YA|G|30
4TUB|1|YA|C|31
*
4TUB|1|YA|G|474
4TUB|1|YA|U|475
4TUB|1|YA|G|476
4TUB|1|YA|A|477
4TUB|1|YA|A|478
4TUB|1|YA|A|479
4TUB|1|YA|A|480
4TUB|1|YA|G|481
*
4TUB|1|YA|C|509
4TUB|1|YA|C|510

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YU

50S ribosomal protein L20

Chain YW

50S ribosomal protein L22

Chain YY

50S ribosomal protein L24