3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
UUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4TUB_050 not in the Motif Atlas
Homologous match to J3_7RQB_010
Geometric discrepancy: 0.068
The information below is about J3_7RQB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89368.3
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

4TUB|1|YA|U|2091
4TUB|1|YA|U|2092
4TUB|1|YA|G|2093
*
4TUB|1|YA|C|2196
4TUB|1|YA|U|2197
4TUB|1|YA|A|2198
4TUB|1|YA|A|2199
4TUB|1|YA|C|2205
*
4TUB|1|YA|G|2219
4TUB|1|YA|G|2224
4TUB|1|YA|A|2225
4TUB|1|YA|C|2226
4TUB|1|YA|A|2227
4TUB|1|YA|G|2228

Current chains

Chain YA
23S rRNA

Nearby chains

Chain QD
30S ribosomal protein S4
Chain Y1
50S ribosomal protein L28
Chain YD
50S ribosomal protein L2
Chain YI
50S ribosomal protein L9

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1592 s