J3_4TUB_062

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUB_062 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0791

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4TUB|1|RA|G|1470
4TUB|1|RA|G|1471
4TUB|1|RA|G|1472
4TUB|1|RA|A|1473
4TUB|1|RA|C|1474
4TUB|1|RA|G|1475
*
4TUB|1|RA|C|1611
4TUB|1|RA|C|1612
*
4TUB|1|RA|G|1615
4TUB|1|RA|A|1616
4TUB|1|RA|A|1617
4TUB|1|RA|A|1618
4TUB|1|RA|A|1619
4TUB|1|RA|G|1620
4TUB|1|RA|C|1621

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2