J3_4TUD_032

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4TUD|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUD_032 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0834

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

4TUD|1|XA|C|826
4TUD|1|XA|U|827
4TUD|1|XA|A|828
4TUD|1|XA|G|829
*
4TUD|1|XA|C|857
4TUD|1|XA|G|858
4TUD|1|XA|A|859
4TUD|1|XA|A|860
4TUD|1|XA|G|861
*
4TUD|1|XA|C|868
4TUD|1|XA|G|869
4TUD|1|XA|U|870
4TUD|1|XA|U|871
4TUD|1|XA|A|872
4TUD|1|XA|A|873
4TUD|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8