J3_4TUD_071

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4TUD|1|XA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUD_071 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1471

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4TUD|1|XA|C|990
4TUD|1|XA|U|991
4TUD|1|XA|U|992
4TUD|1|XA|G|993
4TUD|1|XA|A|994
4TUD|1|XA|C|995
4TUD|1|XA|A|996
4TUD|1|XA|U|997
*
4TUD|1|XA|A|1044
4TUD|1|XA|C|1045
4TUD|1|XA|A|1046
4TUD|1|XA|G|1047
*
4TUD|1|XA|C|1210
4TUD|1|XA|U|1211
4TUD|1|XA|U|1212
4TUD|1|XA|A|1213
4TUD|1|XA|C|1214
4TUD|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

30S ribosomal protein S14 type Z