J3_4TUE_058

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4TUE|1|QA|U|1212, 4TUE|1|QA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUE_058 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.157

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4TUE|1|QA|C|990
4TUE|1|QA|U|991
4TUE|1|QA|U|992
4TUE|1|QA|G|993
4TUE|1|QA|A|994
4TUE|1|QA|C|995
4TUE|1|QA|A|996
4TUE|1|QA|U|997
*
4TUE|1|QA|A|1044
4TUE|1|QA|C|1045
4TUE|1|QA|A|1046
4TUE|1|QA|G|1047
*
4TUE|1|QA|C|1210
4TUE|1|QA|U|1211
4TUE|1|QA|U|1212
4TUE|1|QA|A|1213
4TUE|1|QA|C|1214
4TUE|1|QA|G|1215

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QN

30S ribosomal protein S14 type Z

Chain YA

Large subunit ribosomal RNA; LSU rRNA