J3_4U1U_028

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4U1U|1|CA|U|871, 4U1U|1|CA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U1U_028 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.064

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4U1U|1|CA|C|826
4U1U|1|CA|U|827
4U1U|1|CA|U|828
4U1U|1|CA|G|829
*
4U1U|1|CA|C|857
4U1U|1|CA|G|858
4U1U|1|CA|G|859
4U1U|1|CA|A|860
4U1U|1|CA|G|861
*
4U1U|1|CA|C|868
4U1U|1|CA|G|869
4U1U|1|CA|U|870
4U1U|1|CA|U|871
4U1U|1|CA|A|872
4U1U|1|CA|A|873
4U1U|1|CA|G|874

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CH

30S ribosomal protein S8

Chain CU

30S ribosomal protein S21