J3_4U1U_077

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U1U_077 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.5749

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4U1U|1|DA|U|1344
4U1U|1|DA|C|1345
4U1U|1|DA|G|1346
4U1U|1|DA|A|1347
4U1U|1|DA|C|1348
4U1U|1|DA|C|1349
4U1U|1|DA|C|1350
*
4U1U|1|DA|G|1381
4U1U|1|DA|G|1382
4U1U|1|DA|A|1383
4U1U|1|DA|A|1384
4U1U|1|DA|A|1385
*
4U1U|1|DA|U|1402
4U1U|1|DA|A|1403

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L23