J3_4U1V_003

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4U1V|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U1V_003 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0761

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4U1V|1|AA|C|826
4U1V|1|AA|U|827
4U1V|1|AA|U|828
4U1V|1|AA|G|829
*
4U1V|1|AA|C|857
4U1V|1|AA|G|858
4U1V|1|AA|G|859
4U1V|1|AA|A|860
4U1V|1|AA|G|861
*
4U1V|1|AA|C|868
4U1V|1|AA|G|869
4U1V|1|AA|U|870
4U1V|1|AA|U|871
4U1V|1|AA|A|872
4U1V|1|AA|A|873
4U1V|1|AA|G|874

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21