3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGGAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
4U1V|1|BA|A|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U1V_017 not in the Motif Atlas
Homologous match to J3_5J7L_041
Geometric discrepancy: 0.08
The information below is about J3_5J7L_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

4U1V|1|BA|C|1298
4U1V|1|BA|G|1299
4U1V|1|BA|G|1300
4U1V|1|BA|A|1301
4U1V|1|BA|A|1302
4U1V|1|BA|G|1303
*
4U1V|1|BA|C|1625
4U1V|1|BA|A|1626
4U1V|1|BA|G|1627
*
4U1V|1|BA|C|1639
4U1V|1|BA|A|1640
4U1V|1|BA|A|1641
4U1V|1|BA|G|1642

Current chains

Chain BA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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