J3_4U1V_025

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

4U1V|1|BB|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U1V_025 not in the Motif Atlas

Homologous match to J3_7A0S_014

Geometric discrepancy: 0.2002

The information below is about J3_7A0S_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_13944.1

Basepair signature

cWW-F-F-tSS-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4U1V|1|BB|G|10
4U1V|1|BB|C|11
4U1V|1|BB|C|12
4U1V|1|BB|G|13
4U1V|1|BB|U|14
4U1V|1|BB|A|15
4U1V|1|BB|G|16
*
4U1V|1|BB|C|68
4U1V|1|BB|G|69
4U1V|1|BB|C|70
*
4U1V|1|BB|G|106
4U1V|1|BB|G|107
4U1V|1|BB|A|108
4U1V|1|BB|A|109
4U1V|1|BB|C|110

Current chains

Chain BB

5S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BO

50S ribosomal protein L18

Chain BW

50S ribosomal protein L27