J3_4U1V_051

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

4U1V|1|AA|C|48, 4U1V|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U1V_051 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0914

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4U1V|1|AA|G|46
4U1V|1|AA|C|47
4U1V|1|AA|C|48
4U1V|1|AA|U|49
4U1V|1|AA|A|50
4U1V|1|AA|A|51
4U1V|1|AA|C|52
*
4U1V|1|AA|G|359
4U1V|1|AA|G|360
4U1V|1|AA|G|361
4U1V|1|AA|G|362
4U1V|1|AA|A|363
4U1V|1|AA|A|364
4U1V|1|AA|U|365
4U1V|1|AA|A|366
4U1V|1|AA|U|367
*
4U1V|1|AA|A|393
4U1V|1|AA|G|394
4U1V|1|AA|C|395

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16