J3_4U25_018
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGAAG*CAG*CAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U25_018 not in the Motif Atlas
- Homologous match to J3_5J7L_041
- Geometric discrepancy: 0.0577
- The information below is about J3_5J7L_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32852.6
- Basepair signature
- cWW-tSH-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4U25|1|BA|C|1298
4U25|1|BA|G|1299
4U25|1|BA|G|1300
4U25|1|BA|A|1301
4U25|1|BA|A|1302
4U25|1|BA|G|1303
*
4U25|1|BA|C|1625
4U25|1|BA|A|1626
4U25|1|BA|G|1627
*
4U25|1|BA|C|1639
4U25|1|BA|A|1640
4U25|1|BA|A|1641
4U25|1|BA|G|1642
Current chains
- Chain BA
- 23S rRNA
Nearby chains
No other chains within 10ÅColoring options: