J3_4U25_030

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4U25|1|CA|U|871, 4U25|1|CA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U25_030 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0657

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4U25|1|CA|C|826
4U25|1|CA|U|827
4U25|1|CA|U|828
4U25|1|CA|G|829
*
4U25|1|CA|C|857
4U25|1|CA|G|858
4U25|1|CA|G|859
4U25|1|CA|A|860
4U25|1|CA|G|861
*
4U25|1|CA|C|868
4U25|1|CA|G|869
4U25|1|CA|U|870
4U25|1|CA|U|871
4U25|1|CA|A|872
4U25|1|CA|A|873
4U25|1|CA|G|874

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CH

30S ribosomal protein S8

Chain CU

30S ribosomal protein S21