J3_4U25_038

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4U25|1|CA|U|1240, 4U25|1|CA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U25_038 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1385

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4U25|1|CA|C|1237
4U25|1|CA|A|1238
4U25|1|CA|A|1239
4U25|1|CA|U|1240
4U25|1|CA|G|1241
*
4U25|1|CA|C|1296
4U25|1|CA|G|1297
4U25|1|CA|U|1298
4U25|1|CA|A|1299
4U25|1|CA|G|1300
4U25|1|CA|U|1301
4U25|1|CA|C|1302
4U25|1|CA|C|1303
*
4U25|1|CA|G|1334
4U25|1|CA|U|1335
4U25|1|CA|C|1336
4U25|1|CA|G|1337

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CM

30S ribosomal protein S13