J3_4U25_054
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 4U25|1|AA|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U25_054 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.0763
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4U25|1|AA|C|586
4U25|1|AA|G|587
4U25|1|AA|G|588
*
4U25|1|AA|C|651
4U25|1|AA|U|652
4U25|1|AA|U|653
4U25|1|AA|G|654
4U25|1|AA|A|655
*
4U25|1|AA|U|751
4U25|1|AA|G|752
4U25|1|AA|A|753
4U25|1|AA|C|754
4U25|1|AA|G|755
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AH
- 30S ribosomal protein S8
- Chain AL
- 30S ribosomal protein S12
- Chain AO
- 30S ribosomal protein S15
- Chain AQ
- 30S ribosomal protein S17
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