J3_4U25_064
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U25_064 not in the Motif Atlas
- Homologous match to J3_5J7L_069
- Geometric discrepancy: 0.0582
- The information below is about J3_5J7L_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4U25|1|BA|G|1424
4U25|1|BA|G|1425
4U25|1|BA|G|1426
4U25|1|BA|A|1427
4U25|1|BA|C|1428
4U25|1|BA|G|1429
*
4U25|1|BA|C|1564
4U25|1|BA|C|1565
*
4U25|1|BA|G|1568
4U25|1|BA|A|1569
4U25|1|BA|A|1570
4U25|1|BA|A|1571
4U25|1|BA|A|1572
4U25|1|BA|G|1573
4U25|1|BA|C|1574
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BC
- 50S ribosomal protein L2
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