J3_4U26_003

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4U26|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U26_003 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0542

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4U26|1|AA|C|826
4U26|1|AA|U|827
4U26|1|AA|U|828
4U26|1|AA|G|829
*
4U26|1|AA|C|857
4U26|1|AA|G|858
4U26|1|AA|G|859
4U26|1|AA|A|860
4U26|1|AA|G|861
*
4U26|1|AA|C|868
4U26|1|AA|G|869
4U26|1|AA|U|870
4U26|1|AA|U|871
4U26|1|AA|A|872
4U26|1|AA|A|873
4U26|1|AA|G|874

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21