3D structure

PDB id
4U27 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to flopristin and linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CGG*CUUGA*UGACG
Length
13 nucleotides
Bulged bases
4U27|1|CA|U|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U27_066 not in the Motif Atlas
Homologous match to J3_5J7L_051
Geometric discrepancy: 0.0774
The information below is about J3_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4U27|1|CA|C|586
4U27|1|CA|G|587
4U27|1|CA|G|588
*
4U27|1|CA|C|651
4U27|1|CA|U|652
4U27|1|CA|U|653
4U27|1|CA|G|654
4U27|1|CA|A|655
*
4U27|1|CA|U|751
4U27|1|CA|G|752
4U27|1|CA|A|753
4U27|1|CA|C|754
4U27|1|CA|G|755

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CH
30S ribosomal protein S8
Chain CL
30S ribosomal protein S12
Chain CO
30S ribosomal protein S15
Chain CQ
30S ribosomal protein S17

Coloring options:


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