3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CCAG*CUAGUAA*UGAUUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U3M_022 not in the Motif Atlas
Homologous match to J3_4V88_035
Geometric discrepancy: 0.1068
The information below is about J3_4V88_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.1
Basepair signature
cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4U3M|1|2|C|1161
4U3M|1|2|C|1162
4U3M|1|2|A|1163
4U3M|1|2|G|1164
*
4U3M|1|2|C|1581
4U3M|1|2|U|1582
4U3M|1|2|A|1583
4U3M|1|2|G|1584
4U3M|1|2|U|1585
4U3M|1|2|A|1586
4U3M|1|2|A|1587
*
4U3M|1|2|U|1609
4U3M|1|2|G|1610
4U3M|1|2|A|1611
4U3M|1|2|U|1612
4U3M|1|2|U|1613
4U3M|1|2|A|1614
4U3M|1|2|C|1615
4U3M|1|2|G|1616

Current chains

Chain 2
18S rRNA

Nearby chains

Chain C6
40S ribosomal protein S16-A
Chain D8
40S ribosomal protein S28-A
Chain S5
40S ribosomal protein S5

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1773 s