3D structure

PDB id
4U3U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Cycloheximide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
4U3U|1|5|A|2887, 4U3U|1|5|U|2888
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U3U_044 not in the Motif Atlas
Homologous match to J3_5TBW_014
Geometric discrepancy: 0.0512
The information below is about J3_5TBW_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

4U3U|1|5|U|2886
4U3U|1|5|A|2887
4U3U|1|5|U|2888
4U3U|1|5|C|2889
*
4U3U|1|5|G|2914
4U3U|1|5|U|2915
4U3U|1|5|U|2916
*
4U3U|1|5|A|2930
4U3U|1|5|C|2931
4U3U|1|5|U|2932
4U3U|1|5|A|2933
4U3U|1|5|A|2934
4U3U|1|5|U|2935
4U3U|1|5|A|2936

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l3
60S ribosomal protein L3
Chain m6
60S ribosomal protein L16-A
Chain n3
60S ribosomal protein L23-A

Coloring options:


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