J3_4U4O_018
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 4U4O|1|2|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U4O_018 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1455
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4U4O|1|2|A|881
4U4O|1|2|U|882
4U4O|1|2|C|883
4U4O|1|2|A|884
*
4U4O|1|2|U|928
4U4O|1|2|A|929
4U4O|1|2|A|930
4U4O|1|2|C|931
4U4O|1|2|U|932
4U4O|1|2|A|933
4U4O|1|2|C|934
4U4O|1|2|U|935
4U4O|1|2|G|936
*
4U4O|1|2|C|943
4U4O|1|2|A|944
4U4O|1|2|U|945
4U4O|1|2|U|946
4U4O|1|2|U|947
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C3
- 40S ribosomal protein S13
- Chain C4
- 40S ribosomal protein S14-A
- Chain D6
- 40S ribosomal protein S26-B
- Chain Q3
- 60S ribosomal protein L43-A
- Chain S1
- 40S ribosomal protein S1-A
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