J3_4U4Q_011
3D structure
- PDB id
- 4U4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Homoharringtonine bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CA*UAACU*AG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U4Q_011 not in the Motif Atlas
- Homologous match to J3_8C3A_054
- Geometric discrepancy: 0.1778
- The information below is about J3_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16991.1
- Basepair signature
- cWW-F-cWW-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
4U4Q|1|1|C|1631
4U4Q|1|1|A|1632
*
4U4Q|1|1|U|1641
4U4Q|1|1|A|1642
4U4Q|1|1|A|1643
4U4Q|1|1|C|1644
4U4Q|1|1|U|1645
*
4U4Q|1|1|A|1810
4U4Q|1|1|G|1811
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain N7
- 60S ribosomal protein L27-A
- Chain O4
- 60S ribosomal protein L34-A
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