J3_4U4Y_013
3D structure
- PDB id
- 4U4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Pactamycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 4U4Y|1|1|G|2549, 4U4Y|1|1|U|2550, 4U4Y|1|1|U|2551, 4U4Y|1|1|A|2554, 4U4Y|1|1|U|2558, 4U4Y|1|1|U|2559, 4U4Y|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U4Y_013 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.1725
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4U4Y|1|1|A|2529
4U4Y|1|1|G|2530
4U4Y|1|1|C|2531
4U4Y|1|1|U|2532
*
4U4Y|1|1|A|2547
4U4Y|1|1|C|2548
4U4Y|1|1|G|2549
4U4Y|1|1|U|2550
4U4Y|1|1|U|2551
4U4Y|1|1|C|2552
4U4Y|1|1|U|2553
4U4Y|1|1|A|2554
4U4Y|1|1|G|2555
4U4Y|1|1|C|2556
4U4Y|1|1|A|2557
4U4Y|1|1|U|2558
4U4Y|1|1|U|2559
4U4Y|1|1|C|2560
4U4Y|1|1|A|2561
4U4Y|1|1|A|2562
4U4Y|1|1|G|2563
*
4U4Y|1|1|U|2578
4U4Y|1|1|G|2579
4U4Y|1|1|A|2580
4U4Y|1|1|U|2581
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L2
- 60S ribosomal protein L2-A
- Chain L8
- 60S ribosomal protein L8-A
- Chain N5
- 60S ribosomal protein L25
- Chain N7
- 60S ribosomal protein L27-A
- Chain O0
- 60S ribosomal protein L30
- Chain O4
- 60S ribosomal protein L34-A
- Chain Q3
- 60S ribosomal protein L43-A
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