J3_8P9A_060
3D structure
- PDB id
- 8P9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Methyllissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 8P9A|1|AR|G|2549, 8P9A|1|AR|U|2550, 8P9A|1|AR|U|2551, 8P9A|1|AR|C|2552, 8P9A|1|AR|U|2553, 8P9A|1|AR|A|2554, 8P9A|1|AR|U|2558, 8P9A|1|AR|U|2559, 8P9A|1|AR|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8P9A|1|AR|A|2529
8P9A|1|AR|G|2530
8P9A|1|AR|C|2531
8P9A|1|AR|U|2532
*
8P9A|1|AR|A|2547
8P9A|1|AR|C|2548
8P9A|1|AR|G|2549
8P9A|1|AR|U|2550
8P9A|1|AR|U|2551
8P9A|1|AR|C|2552
8P9A|1|AR|U|2553
8P9A|1|AR|A|2554
8P9A|1|AR|G|2555
8P9A|1|AR|C|2556
8P9A|1|AR|A|2557
8P9A|1|AR|U|2558
8P9A|1|AR|U|2559
8P9A|1|AR|C|2560
8P9A|1|AR|A|2561
8P9A|1|AR|A|2562
8P9A|1|AR|G|2563
*
8P9A|1|AR|U|2578
8P9A|1|AR|G|2579
8P9A|1|AR|A|2580
8P9A|1|AR|U|2581
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L2-A
- Chain CJ
- 60S ribosomal protein L8-A
- Chain CZ
- 60S ribosomal protein L25
- Chain DB
- 60S ribosomal protein L27-A
- Chain DE
- 60S ribosomal protein L30
- Chain DI
- 60S ribosomal protein L34-A
- Chain DR
- 60S ribosomal protein L43-A
- Chain s1
- 40S ribosomal protein S1-A
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