3D structure

PDB id
4U4Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Pactamycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AGAG*CAG*UCGAAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U4Y_018 not in the Motif Atlas
Homologous match to J3_4V88_032
Geometric discrepancy: 0.0903
The information below is about J3_4V88_032
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_54972.1
Basepair signature
cWW-tWW-F-cWW-F-tHS-F-cWW
Number of instances in this motif group
2

Unit IDs

4U4Y|1|2|A|760
4U4Y|1|2|G|761
4U4Y|1|2|A|762
4U4Y|1|2|G|763
*
4U4Y|1|2|C|773
4U4Y|1|2|A|774
4U4Y|1|2|G|775
*
4U4Y|1|2|U|785
4U4Y|1|2|C|786
4U4Y|1|2|G|787
4U4Y|1|2|A|788
4U4Y|1|2|A|789
4U4Y|1|2|U|790

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain D4
40S ribosomal protein S24-A
Chain S4
40S ribosomal protein S4-A
Chain S9
40S ribosomal protein S9-A

Coloring options:


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