J3_4U52_024

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

4U52|1|2|A|1217, 4U52|1|2|G|1445, 4U52|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U52_024 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1043

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

4U52|1|2|C|1215
4U52|1|2|C|1216
4U52|1|2|A|1217
4U52|1|2|G|1218
4U52|1|2|A|1219
4U52|1|2|C|1220
*
4U52|1|2|G|1263
4U52|1|2|G|1264
4U52|1|2|G|1265
4U52|1|2|U|1266
4U52|1|2|G|1267
*
4U52|1|2|U|1442
4U52|1|2|U|1443
4U52|1|2|A|1444
4U52|1|2|G|1445
4U52|1|2|A|1446
4U52|1|2|C|1447
4U52|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C0

40S ribosomal protein S10-A

Chain D9

40S ribosomal protein S29-A

Chain E1

Ubiquitin-40S ribosomal protein S31