J3_4U67_011

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4U67|1|X|A|2497, 4U67|1|X|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U67_011 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.0848

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4U67|1|X|C|2496
4U67|1|X|A|2497
4U67|1|X|U|2498
4U67|1|X|C|2499
*
4U67|1|X|G|2524
4U67|1|X|U|2525
4U67|1|X|U|2526
*
4U67|1|X|A|2540
4U67|1|X|U|2541
4U67|1|X|U|2542
4U67|1|X|A|2543
4U67|1|X|A|2544
4U67|1|X|A|2545
4U67|1|X|G|2546

Current chains

Chain X

23s RNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14