J3_4U67_021

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U67_021 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.1154

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4U67|1|X|U|2074
4U67|1|X|U|2075
4U67|1|X|G|2076
*
4U67|1|X|C|2179
4U67|1|X|U|2180
4U67|1|X|A|2181
4U67|1|X|A|2182
4U67|1|X|C|2183
*
4U67|1|X|G|2202
4U67|1|X|G|2203
4U67|1|X|A|2204
4U67|1|X|C|2205
4U67|1|X|C|2206
4U67|1|X|G|2207

Current chains

Chain X

23s RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28