J3_4U6F_053
3D structure
- PDB id
- 4U6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T-2 toxin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 4U6F|1|6|G|1199, 4U6F|1|6|G|1201, 4U6F|1|6|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U6F_053 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.0746
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4U6F|1|6|C|1180
4U6F|1|6|U|1181
4U6F|1|6|U|1182
4U6F|1|6|A|1183
4U6F|1|6|A|1184
4U6F|1|6|U|1185
4U6F|1|6|U|1186
4U6F|1|6|U|1187
*
4U6F|1|6|G|1198
4U6F|1|6|G|1199
4U6F|1|6|G|1200
4U6F|1|6|G|1201
4U6F|1|6|A|1202
4U6F|1|6|A|1203
4U6F|1|6|A|1204
4U6F|1|6|C|1205
4U6F|1|6|U|1206
4U6F|1|6|C|1207
4U6F|1|6|A|1208
4U6F|1|6|C|1209
*
4U6F|1|6|G|1454
4U6F|1|6|G|1455
4U6F|1|6|C|1456
4U6F|1|6|C|1457
4U6F|1|6|G|1458
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c5
- 40S ribosomal protein S15
- Chain c8
- 40S ribosomal protein S18-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain e1
- Ubiquitin-40S ribosomal protein S31
- Chain sM
- Suppressor protein STM1
Coloring options: