J3_4UG0_004
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 4UG0|1|L5|A|1613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UG0_004 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1681
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4UG0|1|L5|G|1545
4UG0|1|L5|C|1546
4UG0|1|L5|A|1547
4UG0|1|L5|G|1548
*
4UG0|1|L5|C|1580
4UG0|1|L5|G|1581
4UG0|1|L5|U|1582
4UG0|1|L5|A|1583
4UG0|1|L5|G|1584
*
4UG0|1|L5|U|1609
4UG0|1|L5|C|1610
4UG0|1|L5|C|1611
4UG0|1|L5|G|1612
4UG0|1|L5|A|1613
4UG0|1|L5|C|1614
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S RIBOSOMAL PROTEIN L8
- Chain LR
- 60S RIBOSOMAL PROTEIN L19
- Chain Lg
- 60S RIBOSOMAL PROTEIN L34
- Chain Lp
- 60S RIBOSOMAL PROTEIN L37A
Coloring options: