J3_4UG0_024
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 4UG0|1|L5|G|409, 4UG0|1|L5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UG0_024 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.2875
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4UG0|1|L5|U|380
4UG0|1|L5|U|381
4UG0|1|L5|G|382
4UG0|1|L5|A|383
4UG0|1|L5|A|384
4UG0|1|L5|A|385
4UG0|1|L5|A|386
4UG0|1|L5|G|387
4UG0|1|L5|A|388
4UG0|1|L5|A|389
4UG0|1|L5|C|390
*
4UG0|1|L5|G|401
4UG0|1|L5|A|402
4UG0|1|L5|G|403
4UG0|1|L5|U|404
4UG0|1|L5|U|405
4UG0|1|L5|C|406
4UG0|1|L5|A|407
4UG0|1|L5|A|408
4UG0|1|L5|G|409
4UG0|1|L5|A|410
4UG0|1|L5|G|411
4UG0|1|L5|G|412
4UG0|1|L5|G|413
4UG0|1|L5|C|414
4UG0|1|L5|G|415
*
4UG0|1|L8|C|19
4UG0|1|L8|A|20
Current chains
- Chain L5
- 28S ribosomal RNA
- Chain L8
- 5.8S ribosomal RNA
Nearby chains
- Chain LC
- 60S RIBOSOMAL PROTEIN L4
- Chain LP
- 60S RIBOSOMAL PROTEIN L17
- Chain LY
- 60S RIBOSOMAL PROTEIN L26
- Chain Ll
- 60S RIBOSOMAL PROTEIN L39
Coloring options: