J3_4UJC_012
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 4UJC|1|A2|A|4240
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJC_012 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1673
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4UJC|1|A2|C|4201
4UJC|1|A2|U|4202
4UJC|1|A2|C|4203
*
4UJC|1|A2|G|4227
4UJC|1|A2|A|4228
4UJC|1|A2|G|4229
*
4UJC|1|A2|C|4238
4UJC|1|A2|A|4239
4UJC|1|A2|A|4240
4UJC|1|A2|A|4241
4UJC|1|A2|A|4242
4UJC|1|A2|G|4243
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain AA
- Transfer RNA; tRNA
- Chain BD
- 60S RIBOSOMAL PROTEIN L5
- Chain BJ
- 60S RIBOSOMAL PROTEIN L11
- Chain BT
- 60S RIBOSOMAL PROTEIN L21
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