J3_4UJC_023

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

4UJC|1|C1|G|1648, 4UJC|1|C1|A|1679

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJC_023 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.5924

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4UJC|1|C1|C|1218
4UJC|1|C1|C|1219
4UJC|1|C1|A|1220
4UJC|1|C1|G|1221
*
4UJC|1|C1|C|1645
4UJC|1|C1|C|1646
4UJC|1|C1|A|1647
4UJC|1|C1|G|1648
4UJC|1|C1|U|1649
4UJC|1|C1|A|1650
4UJC|1|C1|A|1651
*
4UJC|1|C1|U|1673
4UJC|1|C1|G|1674
4UJC|1|C1|A|1675
4UJC|1|C1|U|1676
4UJC|1|C1|U|1677
4UJC|1|C1|A|1678
4UJC|1|C1|A|1679
4UJC|1|C1|G|1680

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CF

40S RIBOSOMAL PROTEIN US7

Chain CQ

40S RIBOSOMAL PROTEIN US9

Chain Cc

40S RIBOSOMAL PROTEIN ES28