J3_4UJC_026
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJC_026 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.2326
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4UJC|1|C1|U|1340
4UJC|1|C1|C|1341
4UJC|1|C1|U|1342
4UJC|1|C1|U|1343
4UJC|1|C1|A|1344
4UJC|1|C1|G|1345
*
4UJC|1|C1|C|1384
4UJC|1|C1|G|1385
4UJC|1|C1|A|1386
4UJC|1|C1|G|1387
4UJC|1|C1|A|1388
4UJC|1|C1|C|1389
*
4UJC|1|C1|G|1481
4UJC|1|C1|C|1482
4UJC|1|C1|A|1483
4UJC|1|C1|A|1484
4UJC|1|C1|U|1485
4UJC|1|C1|A|1486
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain CC
- 40S RIBOSOMAL PROTEIN US5
- Chain CD
- 40S RIBOSOMAL PROTEIN US3
- Chain CQ
- 40S RIBOSOMAL PROTEIN US9
- Chain CR
- 40S RIBOSOMAL PROTEIN ES17
- Chain CU
- 40S RIBOSOMAL PROTEIN US10
- Chain Cd
- 40S RIBOSOMAL PROTEIN US14
Coloring options: