J3_4UJC_028
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 4UJC|1|A2|U|345, 4UJC|1|A2|A|353, 4UJC|1|A3|C|23
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJC_028 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.1475
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
4UJC|1|A2|C|342
4UJC|1|A2|G|343
4UJC|1|A2|A|344
4UJC|1|A2|U|345
4UJC|1|A2|A|346
4UJC|1|A2|G|347
4UJC|1|A2|U|348
4UJC|1|A2|C|349
4UJC|1|A2|A|350
4UJC|1|A2|A|351
4UJC|1|A2|C|352
4UJC|1|A2|A|353
4UJC|1|A2|A|354
4UJC|1|A2|G|355
4UJC|1|A2|U|356
4UJC|1|A2|A|357
4UJC|1|A2|C|358
*
4UJC|1|A2|G|365
4UJC|1|A2|G|366
4UJC|1|A2|A|367
4UJC|1|A2|A|368
4UJC|1|A2|A|369
4UJC|1|A2|G|370
*
4UJC|1|A3|C|21
4UJC|1|A3|U|22
4UJC|1|A3|C|23
4UJC|1|A3|G|24
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
- Chain A3
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 60S RIBOSOMAL PROTEIN L4
- Chain BY
- 60S RIBOSOMAL PROTEIN L26
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
Coloring options: