J3_4UJD_006

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCAG*CGUAG*UCCGAC

Length

15 nucleotides

Bulged bases

4UJD|1|A2|A|1592

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJD_006 not in the Motif Atlas

Homologous match to J3_5TBW_005

Geometric discrepancy: 0.1728

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4UJD|1|A2|G|1524
4UJD|1|A2|C|1525
4UJD|1|A2|A|1526
4UJD|1|A2|G|1527
*
4UJD|1|A2|C|1559
4UJD|1|A2|G|1560
4UJD|1|A2|U|1561
4UJD|1|A2|A|1562
4UJD|1|A2|G|1563
*
4UJD|1|A2|U|1588
4UJD|1|A2|C|1589
4UJD|1|A2|C|1590
4UJD|1|A2|G|1591
4UJD|1|A2|A|1592
4UJD|1|A2|C|1593

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain AR

60S RIBOSOMAL PROTEIN L19

Chain Ag

60S RIBOSOMAL PROTEIN L34