J3_4UJD_011
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- ACGG*CUGACC*GGGACAGU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJD_011 not in the Motif Atlas
- Homologous match to J3_5TBW_012
- Geometric discrepancy: 0.3059
- The information below is about J3_5TBW_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
4UJD|1|A2|A|3905
4UJD|1|A2|C|3906
4UJD|1|A2|G|3907
4UJD|1|A2|G|3908
*
4UJD|1|A2|C|4042
4UJD|1|A2|U|4043
4UJD|1|A2|G|4044
4UJD|1|A2|A|4045
4UJD|1|A2|C|4046
4UJD|1|A2|C|4047
*
4UJD|1|A2|G|4127
4UJD|1|A2|G|4128
4UJD|1|A2|G|4129
4UJD|1|A2|A|4130
4UJD|1|A2|C|4131
4UJD|1|A2|A|4132
4UJD|1|A2|G|4133
4UJD|1|A2|U|4134
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AA
- 60S RIBOSOMAL PROTEIN L8
- Chain AG
- 60S RIBOSOMAL PROTEIN L7A
- Chain AN
- 60S RIBOSOMAL PROTEIN L15
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