J3_4UJD_018

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJD_018 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1846

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4UJD|1|C1|A|40
4UJD|1|C1|G|41
*
4UJD|1|C1|C|481
4UJD|1|C1|G|482
4UJD|1|C1|C|483
4UJD|1|C1|A|484
4UJD|1|C1|A|485
4UJD|1|C1|A|486
4UJD|1|C1|U|487
*
4UJD|1|C1|A|512
4UJD|1|C1|G|513
4UJD|1|C1|U|514

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain BB

EIF5B

Chain CJ

40S RIBOSOMAL PROTEIN US4

Chain CX

40S RIBOSOMAL PROTEIN US12