J3_4UJD_037
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJD_037 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.169
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
4UJD|1|A2|U|2417
4UJD|1|A2|C|2418
4UJD|1|A2|G|2419
4UJD|1|A2|G|2420
4UJD|1|A2|U|2421
4UJD|1|A2|C|2422
*
4UJD|1|A2|G|2492
4UJD|1|A2|G|2493
4UJD|1|A2|A|2494
4UJD|1|A2|G|2495
4UJD|1|A2|U|2496
*
4UJD|1|A2|A|2513
4UJD|1|A2|A|2514
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AX
- 60S RIBOSOMAL PROTEIN L23A
- Chain Ag
- 60S RIBOSOMAL PROTEIN L34
- Chain Ak
- 60S RIBOSOMAL PROTEIN L38
- Chain Al
- 60S RIBOSOMAL PROTEIN L39
Coloring options: