J3_4UJD_047
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CCG*UUCCG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 4UJD|1|C1|A|1150
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJD_047 not in the Motif Atlas
- Homologous match to J3_8P9A_075
- Geometric discrepancy: 0.1445
- The information below is about J3_8P9A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94999.1
- Basepair signature
- cWW-tWW-cWW-tWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
4UJD|1|C1|C|1094
4UJD|1|C1|C|1095
4UJD|1|C1|G|1096
*
4UJD|1|C1|U|1136
4UJD|1|C1|U|1137
4UJD|1|C1|C|1138
4UJD|1|C1|C|1139
4UJD|1|C1|G|1140
*
4UJD|1|C1|C|1147
4UJD|1|C1|A|1148
4UJD|1|C1|A|1149
4UJD|1|C1|A|1150
4UJD|1|C1|G|1151
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain CA
- 40S RIBOSOMAL PROTEIN US2
- Chain CN
- 40S RIBOSOMAL PROTEIN ES15
- Chain CV
- 40S RIBOSOMAL PROTEIN ES21
- Chain CW
- 40S RIBOSOMAL PROTEIN US8
- Chain Ca
- 40S RIBOSOMAL PROTEIN ES26
- Chain Cb
- 40S RIBOSOMAL PROTEIN ES27
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