J3_4UJE_011

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

ACGG*CUGACC*GGGACAGU

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJE_011 not in the Motif Atlas

Homologous match to J3_5TBW_012

Geometric discrepancy: 0.3059

The information below is about J3_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_18654.1

Basepair signature

cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F

Number of instances in this motif group

2

Unit IDs

4UJE|1|A2|A|3905
4UJE|1|A2|C|3906
4UJE|1|A2|G|3907
4UJE|1|A2|G|3908
*
4UJE|1|A2|C|4042
4UJE|1|A2|U|4043
4UJE|1|A2|G|4044
4UJE|1|A2|A|4045
4UJE|1|A2|C|4046
4UJE|1|A2|C|4047
*
4UJE|1|A2|G|4127
4UJE|1|A2|G|4128
4UJE|1|A2|G|4129
4UJE|1|A2|A|4130
4UJE|1|A2|C|4131
4UJE|1|A2|A|4132
4UJE|1|A2|G|4133
4UJE|1|A2|U|4134

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CA

60S RIBOSOMAL PROTEIN L8

Chain CG

60S RIBOSOMAL PROTEIN L7A

Chain CN

60S RIBOSOMAL PROTEIN L15