J3_4UJE_017

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJE_017 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1846

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4UJE|1|B1|A|40
4UJE|1|B1|G|41
*
4UJE|1|B1|C|481
4UJE|1|B1|G|482
4UJE|1|B1|C|483
4UJE|1|B1|A|484
4UJE|1|B1|A|485
4UJE|1|B1|A|486
4UJE|1|B1|U|487
*
4UJE|1|B1|A|512
4UJE|1|B1|G|513
4UJE|1|B1|U|514

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BJ

40S RIBOSOMAL PROTEIN S9

Chain BX

40S RIBOSOMAL PROTEIN S23