J3_4UJE_022
3D structure
- PDB id
- 4UJE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- 4UJE|1|B1|G|1648, 4UJE|1|B1|A|1679
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJE_022 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.5924
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4UJE|1|B1|C|1218
4UJE|1|B1|C|1219
4UJE|1|B1|A|1220
4UJE|1|B1|G|1221
*
4UJE|1|B1|C|1645
4UJE|1|B1|C|1646
4UJE|1|B1|A|1647
4UJE|1|B1|G|1648
4UJE|1|B1|U|1649
4UJE|1|B1|A|1650
4UJE|1|B1|A|1651
*
4UJE|1|B1|U|1673
4UJE|1|B1|G|1674
4UJE|1|B1|A|1675
4UJE|1|B1|U|1676
4UJE|1|B1|U|1677
4UJE|1|B1|A|1678
4UJE|1|B1|A|1679
4UJE|1|B1|G|1680
Current chains
- Chain B1
- 18S Ribosomal RNA
Nearby chains
- Chain AW
- Transfer RNA; tRNA
- Chain BF
- 40S RIBOSOMAL PROTEIN S5
- Chain BQ
- 40S RIBOSOMAL PROTEIN S16
- Chain Bc
- 40S RIBOSOMAL PROTEIN S28
Coloring options: