J3_4UJE_047
3D structure
- PDB id
- 4UJE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- UCUUAG*CGAGACU*AGCAAUA
- Length
- 20 nucleotides
- Bulged bases
- 4UJE|1|B1|U|1342, 4UJE|1|B1|A|1483
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJE_047 not in the Motif Atlas
- Geometric match to J3_5J7L_008
- Geometric discrepancy: 0.3383
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4UJE|1|B1|U|1340
4UJE|1|B1|C|1341
4UJE|1|B1|U|1342
4UJE|1|B1|U|1343
4UJE|1|B1|A|1344
4UJE|1|B1|G|1345
*
4UJE|1|B1|C|1384
4UJE|1|B1|G|1385
4UJE|1|B1|A|1386
4UJE|1|B1|G|1387
4UJE|1|B1|A|1388
4UJE|1|B1|C|1389
4UJE|1|B1|U|1390
*
4UJE|1|B1|A|1480
4UJE|1|B1|G|1481
4UJE|1|B1|C|1482
4UJE|1|B1|A|1483
4UJE|1|B1|A|1484
4UJE|1|B1|U|1485
4UJE|1|B1|A|1486
Current chains
- Chain B1
- 18S Ribosomal RNA
Nearby chains
- Chain BC
- 40S RIBOSOMAL PROTEIN S2
- Chain BD
- 40S RIBOSOMAL PROTEIN S3
- Chain BQ
- 40S RIBOSOMAL PROTEIN S16
- Chain BR
- 40S RIBOSOMAL PROTEIN S17
- Chain BU
- 40S RIBOSOMAL PROTEIN S20
- Chain Bd
- 40S RIBOSOMAL PROTEIN S29
Coloring options: