J3_4UY8_009

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

4UY8|1|A|U|2833, 4UY8|1|A|A|2835, 4UY8|1|A|U|2884, 4UY8|1|A|G|2885

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UY8_009 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.5949

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4UY8|1|A|G|2812
4UY8|1|A|A|2813
4UY8|1|A|A|2814
4UY8|1|A|C|2815
*
4UY8|1|A|G|2831
4UY8|1|A|U|2832
4UY8|1|A|U|2833
4UY8|1|A|G|2834
4UY8|1|A|A|2835
4UY8|1|A|U|2836
*
4UY8|1|A|A|2882
4UY8|1|A|A|2883
4UY8|1|A|U|2884
4UY8|1|A|G|2885
4UY8|1|A|A|2886
4UY8|1|A|A|2887
4UY8|1|A|C|2888

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L32

Chain D

50S RIBOSOMAL PROTEIN L3

Chain N

50S RIBOSOMAL PROTEIN L17