J3_4UY8_011

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UY8_011 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0733

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

4UY8|1|A|G|30
4UY8|1|A|C|31
*
4UY8|1|A|G|474
4UY8|1|A|C|475
4UY8|1|A|G|476
4UY8|1|A|A|477
4UY8|1|A|A|478
4UY8|1|A|A|479
4UY8|1|A|A|480
4UY8|1|A|G|481
*
4UY8|1|A|C|509
4UY8|1|A|C|510

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S RIBOSOMAL PROTEIN L20

Chain U

50S RIBOSOMAL PROTEIN L24